Field Detail

• MODE_FILL_MODEL

  public static final int MODE_FILL_MODEL

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  Constant Field Values

• MODE_FILL_COORDS

  public static final int MODE_FILL_COORDS

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  Constant Field Values

• MODE_FILL_RADII

  public static final int MODE_FILL_RADII

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  Constant Field Values

• MODE_FILL_MOLECULES

  public static final int MODE_FILL_MOLECULES

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  Constant Field Values

• MODE_GET_ATTACHED_HYDROGENS

  public static final int MODE_GET_ATTACHED_HYDROGENS

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  Constant Field Values

• MODE_FILL_MULTIMODEL

  public static final int MODE_FILL_MULTIMODEL

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  Constant Field Values

• programInfo

  public java.lang.String programInfo

• fileName

  public java.lang.String fileName

• modelName

  public java.lang.String modelName

• modelIndex

  public int modelIndex

• bsSelected

  public BS bsSelected

• bsIgnored

  public BS bsIgnored

• bsMolecules

  public BS[] bsMolecules

• radiusData

  public RadiusData radiusData

• firstAtomIndex

  public int firstAtomIndex

• firstModelIndex

  public int firstModelIndex

• lastModelIndex

  public int lastModelIndex

• hAtomRadius

  public float hAtomRadius

• atomIndex

  public int[] atomIndex

• atoms

  public Atom[] atoms

• xyz

  public javajs.util.P3[] xyz

• atomRadius

  public float[] atomRadius

• atomicNumber

  public int[] atomicNumber

• atomMolecule

  public int[] atomMolecule

• hAtoms

  public javajs.util.P3[][] hAtoms

• ac

  public int ac

• hydrogenAtomCount

  public int hydrogenAtomCount

• adpMode

  public int adpMode

Constructor Detail

• AtomData

  public AtomData()

Method Detail

• transformXYZ

  public void transformXYZ​(javajs.util.M4 mat,
                           BS bs)

  allow for transformed XYZ

  Parameters:

  mat -

  bs -