Constructor Detail

• JvxlReader

  JvxlReader()

Method Detail

• init2

  void init2​(SurfaceGenerator sg,
             java.io.BufferedReader br)

  Overrides:

  init2 in class JvxlXmlReader

• readParameters

  protected void readParameters()
                         throws java.lang.Exception

  Overrides:

  readParameters in class JvxlXmlReader

  Throws:

  java.lang.Exception

• jvxlReadFractionData

  protected java.lang.String jvxlReadFractionData​(java.lang.String type,
                                                  int nPoints)

  Description copied from class: JvxlXmlReader
  "edge" data includes two parts -- a compressed bitset indicating exactly which edges, in order or processing by Jmol, are crossed by the surface, and a set of fractions indicating how far along that edge (good to 1 part in 8100) that surface crosses that edge. We are just reading he fractions here. "color" data comprises the corresponding sequence of data mapping values, again stored to a precision of 1 part in 8100, relative to a range of values.

  Overrides:

  jvxlReadFractionData in class JvxlXmlReader

  Returns:

  data

• gotoData

  protected void gotoData​(int n,
                          int nPoints)
                   throws java.lang.Exception

  Overrides:

  gotoData in class JvxlXmlReader

  Throws:

  java.lang.Exception

• jvxlReadDefinitionLine

  private void jvxlReadDefinitionLine​(boolean showMsg)
                               throws java.lang.Exception

  Throws:

  java.lang.Exception

• readSurfaceData

  protected void readSurfaceData​(boolean isMapDataIgnored)
                          throws java.lang.Exception

  Overrides:

  readSurfaceData in class JvxlXmlReader

  Throws:

  java.lang.Exception

• jvxlSkipData

  protected void jvxlSkipData​(int nPoints,
                              boolean doSkipColorData)
                       throws java.lang.Exception

  Overrides:

  jvxlSkipData in class JvxlXmlReader

  Throws:

  java.lang.Exception

• jvxlSkipDataBlock

  private void jvxlSkipDataBlock​(int nPoints,
                                 boolean isInt)
                          throws java.lang.Exception

  Throws:

  java.lang.Exception

• countData

  private int countData​(java.lang.String str)