Field Detail

• atoms

  private Atom[] atoms

• center

  private javajs.util.T3 center

• translation

  private javajs.util.T3 translation

• nFound

  private int nFound

• maxDistance2

  private float maxDistance2

• distance2

  private float distance2

• unitCell

  private SymmetryInterface unitCell

• minXYZ

  private javajs.util.P3i minXYZ

• maxXYZ

  private javajs.util.P3i maxXYZ

• t

  private javajs.util.P3i t

• p

  private javajs.util.P3 p

• ipt

  private int ipt

• unitList

  private javajs.util.Lst<javajs.util.P3[]> unitList

• done

  private boolean done

• nAtoms

  private int nAtoms

• listPt

  private int listPt

Constructor Detail

• UnitCellIterator

  public UnitCellIterator()

Method Detail

• set

  public UnitCellIterator set​(SymmetryInterface unitCell,
                              Atom atom,
                              Atom[] atoms,
                              BS bsAtoms,
                              float distance)

  Parameters:

  unitCell -

  atom -

  atoms -

  bsAtoms -

  distance - <= 0 indicates that distance will be set later, probably from a point

  Returns:

  this

• setModel

  public void setModel​(ModelSet modelSet,
                       int modelIndex,
                       int zeroBase,
                       int atomIndex,
                       javajs.util.T3 center,
                       float distance,
                       RadiusData rd)

  Specified by:

  setModel in interface AtomIndexIterator

  zeroBase - an offset used in the AtomIteratorWithinSet only

• setCenter

  public void setCenter​(javajs.util.T3 center,
                        float distance)

  Specified by:

  setCenter in interface AtomIndexIterator

• addAtoms

  public void addAtoms​(BS bsAtoms)

  Specified by:

  addAtoms in interface AtomIndexIterator

• hasNext

  public boolean hasNext()

  Specified by:

  hasNext in interface AtomIndexIterator

• nextCell

  private boolean nextCell()

• next

  public int next()

  Specified by:

  next in interface AtomIndexIterator

• getAtom

  private Atom getAtom()

• foundDistance2

  public float foundDistance2()

  Specified by:

  foundDistance2 in interface AtomIndexIterator

• getPosition

  public javajs.util.P3 getPosition()

  Specified by:

  getPosition in interface AtomIndexIterator

• release

  public void release()

  Specified by:

  release in interface AtomIndexIterator