| depth | vg::MinimumDistanceIndex::SnarlIndex | protected |
| dist_to_ends(size_t rank, int64_t distL, int64_t distR) const | vg::MinimumDistanceIndex::SnarlIndex | |
| distances | vg::MinimumDistanceIndex::SnarlIndex | protected |
| end_id | vg::MinimumDistanceIndex::SnarlIndex | protected |
| id_in_parent | vg::MinimumDistanceIndex::SnarlIndex | protected |
| in_chain | vg::MinimumDistanceIndex::SnarlIndex | protected |
| index(size_t start, size_t end) const | vg::MinimumDistanceIndex::SnarlIndex | protected |
| insert_distance(size_t start, size_t end, int64_t dist) | vg::MinimumDistanceIndex::SnarlIndex | |
| is_simple_snarl | vg::MinimumDistanceIndex::SnarlIndex | protected |
| is_trivial_snarl() const | vg::MinimumDistanceIndex::SnarlIndex | |
| is_unary_snarl | vg::MinimumDistanceIndex::SnarlIndex | protected |
| load(istream &in, bool include_component) | vg::MinimumDistanceIndex::SnarlIndex | |
| max_width | vg::MinimumDistanceIndex::SnarlIndex | protected |
| MinimumDistanceIndex class | vg::MinimumDistanceIndex::SnarlIndex | friend |
| node_length(size_t i) const | vg::MinimumDistanceIndex::SnarlIndex | inline |
| num_nodes | vg::MinimumDistanceIndex::SnarlIndex | protected |
| parent_id | vg::MinimumDistanceIndex::SnarlIndex | protected |
| print_self() const | vg::MinimumDistanceIndex::SnarlIndex | |
| rev_in_parent | vg::MinimumDistanceIndex::SnarlIndex | protected |
| serialize(ostream &out) const | vg::MinimumDistanceIndex::SnarlIndex | |
| snarl_distance(size_t start, size_t end) const | vg::MinimumDistanceIndex::SnarlIndex | inline |
| snarl_length() const | vg::MinimumDistanceIndex::SnarlIndex | |
| snarl_to_json() | vg::MinimumDistanceIndex::SnarlIndex | |
| SnarlIndex(id_t parent_id, bool rev_in_parent, id_t id_in_parent, id_t end_id, bool is_unary_snarl, size_t depth, size_t num_nodes, bool in_chain) | vg::MinimumDistanceIndex::SnarlIndex | |
| SnarlIndex() | vg::MinimumDistanceIndex::SnarlIndex | |
| SnarlSeedClusterer class | vg::MinimumDistanceIndex::SnarlIndex | friend |
