index_manager.hpp File Reference

#include <string>
#include <utility>
#include <memory>
#include <vector>
#include <map>
#include <gbwt/gbwt.h>
#include <gbwtgraph/gbwtgraph.h>
#include <gbwtgraph/minimizer.h>
#include "handle.hpp"
#include "min_distance.hpp"
#include "snarls.hpp"
#include "progressive.hpp"

Classes
class	vg::IndexManager

Namespaces
	vg

Detailed Description

: defines a system for managing index files using a basename and constructing missing ones